All Classes
AbstractNode
BoxPlotUtils
ClassificationParser
ClassificationResult
ClassificationResultFormatter
ClassificationResultFormatter.FORMAT
Classifier
ClassifierCmd
ClassifierFactory
ClassifierGridware
ClassifierMain
ClassifierSequence
ClassifierTraineeMaker
ClassifierTreeBuilder
ClassifierTreeBuilder.ClassifierTaxonFactory
CmdOptions
CompareMisclassified
CompareTrainingSets
ComparisonBrowserBean
ComparisonBrowserNode
ComparisonCmd
ComparisonResultTreeSet
ComparisonResultTreeSet.ComparisonResultComparator
CopyNumberParser
CorrectAssignment
CrossValidate
CrossValidateMain
DecisionMaker
DefaultPrintVisitor
EstimateSPrintVisitor
FindWindowFrame
GenusWordConditionalProb
GenusWordProbFileParser
HierarchyTree
HierarchyTree
HierarchyVersion
LeaveOneOutTester
LeaveOneOutTesterMain
LineageSequence
LineageSequenceParser
LogWordPriorFileParser
Main
MainMovingWindow
MCSample
MCSamplePrintUtil
MCSampleResult
MCTaxon
MergeTaxonCount
MultiClassifier
MultiClassifierResult
NameRankDupException
NBClassifier
PairwiseSeqDistance
PixelCalculatorBean
ProbIndexFileParser
RankAssignment
RawGenusWordConditionalProb
RawHierarchyTree
RdmSelectTaxon
Reprocess
Score
SeqErrorBean
SeqInfo
ShortSequenceException
SigCalculator
SortedROCSet
SortedROCSet.PredictionCount
SortedROCSet.ResultComparator
StatusCount
StatusCountUtils
TaxaSimilarityMain
Taxon
Taxonomy
Taxonomy
TaxonTree
TrainingDataException
TrainingInfo
TreeFactory
TreeFactory
TreeFileParser
UncNode
Unifrac
UnifracTaxon
UnifracTree
UnifracTree.UnifracResult
UnifracTreeBuilder
UnifracTreeBuilder.UnifracSample
ValidationClassificationResult
ValidClassificationResultFacade
Window
WindowTester
Ztable