public class MultiClassifier
extends java.lang.Object
Constructor and Description |
---|
MultiClassifier(java.lang.String propfile,
java.lang.String gene) |
MultiClassifier(java.lang.String propfile,
java.lang.String gene,
java.io.File biomFile,
java.io.File metadataFile) |
Modifier and Type | Method and Description |
---|---|
boolean |
hasCopyNumber() |
MultiClassifierResult |
multiClassificationParser(java.util.List<MCSample> samples,
float confidence,
java.io.PrintWriter assign_out,
ClassificationResultFormatter.FORMAT format,
java.lang.String printRank,
java.util.HashSet<java.lang.String> taxonFilter)
Input files are the classification results
printRank indicates which rank to filter by the confidence for the detail assignment output
taxonFilter indicates which taxon to match for the detail assignment output
|
MultiClassifierResult |
multiCompare(java.util.List<MCSample> samples) |
MultiClassifierResult |
multiCompare(java.util.List<MCSample> samples,
float conf,
int min_bootstrap_words) |
MultiClassifierResult |
multiCompare(java.util.List<MCSample> samples,
float confidence,
java.io.PrintWriter assign_out,
ClassificationResultFormatter.FORMAT format,
int min_bootstrap_words)
Input files are sequence files
|
MultiClassifierResult |
multiCompare(java.util.List<MCSample> samples,
int min_bootstrap_words) |
MultiClassifierResult |
multiCompare(java.util.List<MCSample> samples,
java.io.PrintWriter assign_out,
int min_bootstrap_words) |
public MultiClassifier(java.lang.String propfile, java.lang.String gene)
public MultiClassifier(java.lang.String propfile, java.lang.String gene, java.io.File biomFile, java.io.File metadataFile) throws java.io.IOException
java.io.IOException
public boolean hasCopyNumber()
public MultiClassifierResult multiCompare(java.util.List<MCSample> samples) throws java.io.IOException
java.io.IOException
public MultiClassifierResult multiCompare(java.util.List<MCSample> samples, int min_bootstrap_words) throws java.io.IOException
java.io.IOException
public MultiClassifierResult multiCompare(java.util.List<MCSample> samples, float conf, int min_bootstrap_words) throws java.io.IOException
java.io.IOException
public MultiClassifierResult multiCompare(java.util.List<MCSample> samples, java.io.PrintWriter assign_out, int min_bootstrap_words) throws java.io.IOException
java.io.IOException
public MultiClassifierResult multiCompare(java.util.List<MCSample> samples, float confidence, java.io.PrintWriter assign_out, ClassificationResultFormatter.FORMAT format, int min_bootstrap_words) throws java.io.IOException
java.io.IOException
public MultiClassifierResult multiClassificationParser(java.util.List<MCSample> samples, float confidence, java.io.PrintWriter assign_out, ClassificationResultFormatter.FORMAT format, java.lang.String printRank, java.util.HashSet<java.lang.String> taxonFilter) throws java.io.IOException
java.io.IOException