public class UnifracTaxon extends MCTaxon
Count_Array_size, sampleCountMap
Constructor and Description |
---|
UnifracTaxon(int taxid,
java.lang.String name,
java.lang.String rank,
float bl) |
UnifracTaxon(int taxid,
java.lang.String name,
java.lang.String rank,
float bl,
boolean unclassified) |
UnifracTaxon(MCTaxon taxon,
float bl) |
Modifier and Type | Method and Description |
---|---|
void |
addSampleCount(MCSample sample,
double count) |
boolean |
containsSample(MCSample sample) |
float |
getBl() |
void |
resetSamples() |
void |
resetSamples(java.util.List<UnifracTreeBuilder.UnifracSample> samplePool) |
void |
setSampleCount(MCSample sample,
double count) |
addSequence, getCopyCorrectedCount, getCount, getLineage, getSamples, getSequences, incCount, incCount, setLineage
public UnifracTaxon(int taxid, java.lang.String name, java.lang.String rank, float bl)
public UnifracTaxon(int taxid, java.lang.String name, java.lang.String rank, float bl, boolean unclassified)
public UnifracTaxon(MCTaxon taxon, float bl)
public float getBl()
public boolean containsSample(MCSample sample)
public void resetSamples()
public void setSampleCount(MCSample sample, double count)
public void addSampleCount(MCSample sample, double count)
public void resetSamples(java.util.List<UnifracTreeBuilder.UnifracSample> samplePool)