public class ComparisonCmd
extends java.lang.Object
Modifier and Type | Field and Description |
---|---|
static java.lang.String |
COMPARE_OUTFILE_DESC |
static java.lang.String |
COMPARE_OUTFILE_LONG_OPT |
static java.lang.String |
COMPARE_OUTFILE_SHORT_OPT |
static java.lang.String |
QUERYFILE_DESC |
static java.lang.String |
QUERYFILE1_LONG_OPT |
static java.lang.String |
QUERYFILE1_SHORT_OPT |
static java.lang.String |
QUERYFILE2_LONG_OPT |
static java.lang.String |
QUERYFILE2_SHORT_OPT |
Constructor and Description |
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ComparisonCmd(java.lang.String propfile,
java.lang.String gene)
Creates a new Manager
|
Modifier and Type | Method and Description |
---|---|
void |
doClassify(java.lang.String s1,
java.lang.String s2,
java.lang.String detailFile,
java.lang.String sigFile,
ClassificationResultFormatter.FORMAT format)
given the parser and root, calls the tester to do the classification
|
static void |
main(java.lang.String[] args) |
static void |
printLicense()
Prints the license information to std err.
|
public static final java.lang.String QUERYFILE1_LONG_OPT
public static final java.lang.String QUERYFILE2_LONG_OPT
public static final java.lang.String COMPARE_OUTFILE_LONG_OPT
public static final java.lang.String QUERYFILE1_SHORT_OPT
public static final java.lang.String QUERYFILE2_SHORT_OPT
public static final java.lang.String COMPARE_OUTFILE_SHORT_OPT
public static final java.lang.String QUERYFILE_DESC
public static final java.lang.String COMPARE_OUTFILE_DESC
public ComparisonCmd(java.lang.String propfile, java.lang.String gene) throws java.io.IOException, TrainingDataException
java.io.IOException
TrainingDataException
public void doClassify(java.lang.String s1, java.lang.String s2, java.lang.String detailFile, java.lang.String sigFile, ClassificationResultFormatter.FORMAT format) throws java.io.IOException
java.io.IOException
public static void printLicense()
public static void main(java.lang.String[] args) throws java.lang.Exception
java.lang.Exception