public class LeaveOneOutTester
extends java.lang.Object
Constructor and Description |
---|
LeaveOneOutTester(java.io.Writer writer,
int numGoodBases) |
Modifier and Type | Method and Description |
---|---|
java.util.ArrayList<java.util.HashMap<java.lang.String,StatusCount>> |
classify(TreeFactory factory,
LineageSequenceParser parser,
boolean useSeed,
int min_bootstrap_words,
boolean hideTaxon)
perform leave-one-out test.
|
void |
displayTreeErrorRate(HierarchyTree root,
int indent) |
protected java.util.Map |
getNum_hierLevelMap() |
public LeaveOneOutTester(java.io.Writer writer, int numGoodBases) throws java.io.IOException
writer
- numGoodBases
- 0 for all bases from the query, positive integer for partial length testingjava.io.IOException
public java.util.ArrayList<java.util.HashMap<java.lang.String,StatusCount>> classify(TreeFactory factory, LineageSequenceParser parser, boolean useSeed, int min_bootstrap_words, boolean hideTaxon) throws java.io.IOException
factory
- parser
- useSeed
- java.io.IOException
public void displayTreeErrorRate(HierarchyTree root, int indent) throws java.io.IOException
java.io.IOException
protected java.util.Map getNum_hierLevelMap()