public class UnifracTree extends edu.msu.cme.rdp.taxatree.ConcretRoot<UnifracTaxon>
Modifier and Type | Class and Description |
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static class |
UnifracTree.UnifracResult |
Constructor and Description |
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UnifracTree() |
Modifier and Type | Method and Description |
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void |
addChild(UnifracTaxon child,
int parentId) |
void |
addTaxon(int parent,
int taxid,
java.lang.String name,
MCSample sample,
float bl) |
UnifracTree.UnifracResult |
computeUnifrac() |
UnifracTree.UnifracResult |
computeUnifracSig(int permutations,
boolean weighted) |
UnifracTree.UnifracResult |
computeWeightedUnifrac() |
void |
printLeaves() |
void |
refreshInnerTaxa() |
public UnifracTree.UnifracResult computeUnifrac()
public UnifracTree.UnifracResult computeUnifracSig(int permutations, boolean weighted)
public UnifracTree.UnifracResult computeWeightedUnifrac()
public void printLeaves()
public void addChild(UnifracTaxon child, int parentId)
addChild
in class edu.msu.cme.rdp.taxatree.ConcretRoot<UnifracTaxon>
public void refreshInnerTaxa()
public void addTaxon(int parent, int taxid, java.lang.String name, MCSample sample, float bl)