public class PairwiseSeqDistance
extends java.lang.Object
Constructor and Description |
---|
PairwiseSeqDistance(java.lang.String trainseqFile,
java.lang.String taxFile,
edu.msu.cme.rdp.alignment.AlignmentMode mode,
boolean show_alignment) |
Modifier and Type | Method and Description |
---|---|
static void |
main(java.lang.String[] args)
This program does the pairwise alignment between each pair of sequences,
reports a summary of the average distances and the stdev at each rank.
|
void |
printSummary(java.io.PrintStream outStream) |
public PairwiseSeqDistance(java.lang.String trainseqFile, java.lang.String taxFile, edu.msu.cme.rdp.alignment.AlignmentMode mode, boolean show_alignment) throws java.io.IOException, edu.msu.cme.rdp.alignment.pairwise.rna.OverlapCheckFailedException
java.io.IOException
edu.msu.cme.rdp.alignment.pairwise.rna.OverlapCheckFailedException
public void printSummary(java.io.PrintStream outStream)
public static void main(java.lang.String[] args) throws java.lang.Exception
args
- java.lang.Exception