public class ClassificationResultFormatter
extends java.lang.Object
Modifier and Type | Class and Description |
---|---|
static class |
ClassificationResultFormatter.FORMAT |
Modifier and Type | Field and Description |
---|---|
static java.util.List<ClassificationResultFormatter.FORMAT> |
fileFormats |
static java.lang.String[] |
RANKS |
static java.lang.String[] |
RANKS_WITHSPECIES |
Constructor and Description |
---|
ClassificationResultFormatter() |
Modifier and Type | Method and Description |
---|---|
static java.lang.String |
getAllRankOutput(ClassificationResult result) |
static java.lang.String |
getAllRankOutput(ClassificationResult result,
double conf) |
static java.lang.String |
getBiomOutput(java.lang.String[] ranks,
ClassificationResult result,
float conf,
char delimiter)
Output the classification result suitable to load into biom format.
|
static java.lang.String |
getDBOutput(ClassificationResult result,
float conf) |
static java.lang.String |
getFilterByConfOutput(ClassificationResult result,
float conf) |
static java.lang.String |
getFilterByConfOutput(java.lang.String[] ranks,
ClassificationResult result,
float conf) |
static java.lang.String |
getFixRankOutput(ClassificationResult result) |
static java.lang.String |
getFixRankOutput(java.lang.String[] ranks,
ClassificationResult result) |
static java.lang.String |
getOutput(ClassificationResult result,
ClassificationResultFormatter.FORMAT format) |
static java.lang.String |
getOutput(ClassificationResult result,
ClassificationResultFormatter.FORMAT format,
float conf,
java.lang.String[] ranks) |
public static java.lang.String[] RANKS
public static java.lang.String[] RANKS_WITHSPECIES
public static final java.util.List<ClassificationResultFormatter.FORMAT> fileFormats
public static java.lang.String getOutput(ClassificationResult result, ClassificationResultFormatter.FORMAT format)
public static java.lang.String getOutput(ClassificationResult result, ClassificationResultFormatter.FORMAT format, float conf, java.lang.String[] ranks)
public static java.lang.String getAllRankOutput(ClassificationResult result)
public static java.lang.String getAllRankOutput(ClassificationResult result, double conf)
public static java.lang.String getFixRankOutput(ClassificationResult result)
public static java.lang.String getFixRankOutput(java.lang.String[] ranks, ClassificationResult result)
public static java.lang.String getFilterByConfOutput(ClassificationResult result, float conf)
public static java.lang.String getFilterByConfOutput(java.lang.String[] ranks, ClassificationResult result, float conf)
public static java.lang.String getBiomOutput(java.lang.String[] ranks, ClassificationResult result, float conf, char delimiter)
public static java.lang.String getDBOutput(ClassificationResult result, float conf)