public class CmdOptions
extends java.lang.Object
Modifier and Type | Field and Description |
---|---|
static java.lang.String |
BIOMFILE_DESC |
static java.lang.String |
BIOMFILE_LONG_OPT |
static java.lang.String |
BIOMFILE_SHORT_OPT |
static java.lang.String |
BOOTSTRAP_DESC |
static java.lang.String |
BOOTSTRAP_LONG_OPT |
static java.lang.String |
BOOTSTRAP_OUTFILE_DESC |
static java.lang.String |
BOOTSTRAP_OUTFILE_LONG_OPT |
static java.lang.String |
BOOTSTRAP_OUTFILE_SHORT_OPT |
static java.lang.String |
BOOTSTRAP_SHORT_OPT |
static float |
DEFAULT_CONF |
static ClassificationResultFormatter.FORMAT |
DEFAULT_FORMAT |
static java.lang.String |
DEFAULT_GENE |
static java.lang.String |
FORMAT_DESC |
static java.lang.String |
FORMAT_LONG_OPT |
static java.lang.String |
FORMAT_SHORT_OPT |
static java.lang.String |
GENE_DESC |
static java.lang.String |
GENE_LONG_OPT |
static java.lang.String |
GENE_SHORT_OPT |
static java.lang.String |
HIER_OUTFILE_DESC |
static java.lang.String |
HIER_OUTFILE_LONG_OPT |
static java.lang.String |
HIER_OUTFILE_SHORT_OPT |
static java.lang.String |
METADATA_DESC |
static java.lang.String |
METADATA_LONG_OPT |
static java.lang.String |
METADATA_SHORT_OPT |
static java.lang.String |
MIN_BOOTSTRAP_WORDS_LONG_OPT |
static java.lang.String |
MIN_BOOTSTRAP_WORDS_SHORT_OPT |
static java.lang.String |
MIN_WORDS_DESC |
static java.lang.String |
OUTFILE_DESC |
static java.lang.String |
OUTFILE_LONG_OPT |
static java.lang.String |
OUTFILE_SHORT_OPT |
static java.lang.String |
QUERYFILE_DESC |
static java.lang.String |
QUERYFILE_LONG_OPT |
static java.lang.String |
QUERYFILE_SHORT_OPT |
static java.lang.String |
RANK_LONG_OPT |
static java.lang.String |
RANK_SHORT_OPT |
static java.lang.String |
SAMPLE_LONG_OPT |
static java.lang.String |
SHORTSEQ_OUTFILE_DESC |
static java.lang.String |
SHORTSEQ_OUTFILE_LONG_OPT |
static java.lang.String |
SHORTSEQ_OUTFILE_SHORT_OPT |
static java.lang.String |
TAXON_LONG_OPT |
static java.lang.String |
TAXON_SHORT_OPT |
static java.lang.String |
TRAINPROPFILE_DESC |
static java.lang.String |
TRAINPROPFILE_LONG_OPT |
static java.lang.String |
TRAINPROPFILE_SHORT_OPT |
Constructor and Description |
---|
CmdOptions() |
public static ClassificationResultFormatter.FORMAT DEFAULT_FORMAT
public static float DEFAULT_CONF
public static java.lang.String DEFAULT_GENE
public static final java.lang.String QUERYFILE_LONG_OPT
public static final java.lang.String OUTFILE_LONG_OPT
public static final java.lang.String TRAINPROPFILE_LONG_OPT
public static final java.lang.String FORMAT_LONG_OPT
public static final java.lang.String GENE_LONG_OPT
public static final java.lang.String MIN_BOOTSTRAP_WORDS_LONG_OPT
public static final java.lang.String HIER_OUTFILE_LONG_OPT
public static final java.lang.String BOOTSTRAP_LONG_OPT
public static final java.lang.String RANK_LONG_OPT
public static final java.lang.String TAXON_LONG_OPT
public static final java.lang.String BOOTSTRAP_OUTFILE_LONG_OPT
public static final java.lang.String SHORTSEQ_OUTFILE_LONG_OPT
public static final java.lang.String BIOMFILE_LONG_OPT
public static final java.lang.String SAMPLE_LONG_OPT
public static final java.lang.String METADATA_LONG_OPT
public static final java.lang.String QUERYFILE_SHORT_OPT
public static final java.lang.String OUTFILE_SHORT_OPT
public static final java.lang.String TRAINPROPFILE_SHORT_OPT
public static final java.lang.String FORMAT_SHORT_OPT
public static final java.lang.String GENE_SHORT_OPT
public static final java.lang.String MIN_BOOTSTRAP_WORDS_SHORT_OPT
public static final java.lang.String HIER_OUTFILE_SHORT_OPT
public static final java.lang.String BOOTSTRAP_SHORT_OPT
public static final java.lang.String RANK_SHORT_OPT
public static final java.lang.String TAXON_SHORT_OPT
public static final java.lang.String BOOTSTRAP_OUTFILE_SHORT_OPT
public static final java.lang.String SHORTSEQ_OUTFILE_SHORT_OPT
public static final java.lang.String BIOMFILE_SHORT_OPT
public static final java.lang.String METADATA_SHORT_OPT
public static final java.lang.String QUERYFILE_DESC
public static final java.lang.String OUTFILE_DESC
public static final java.lang.String TRAINPROPFILE_DESC
public static final java.lang.String FORMAT_DESC
public static final java.lang.String GENE_DESC
public static final java.lang.String MIN_WORDS_DESC
public static final java.lang.String HIER_OUTFILE_DESC
public static final java.lang.String BOOTSTRAP_DESC
public static final java.lang.String BOOTSTRAP_OUTFILE_DESC
public static final java.lang.String SHORTSEQ_OUTFILE_DESC
public static final java.lang.String BIOMFILE_DESC
public static final java.lang.String METADATA_DESC