public class ClassifierCmd
extends java.lang.Object
Constructor and Description |
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ClassifierCmd() |
Modifier and Type | Method and Description |
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void |
doClassify(java.lang.String inputFile,
java.lang.String outFile,
java.lang.String propfile,
ClassificationResultFormatter.FORMAT format,
java.lang.String gene,
int min_bootstrap_words)
It classifies query sequences from the input file.
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static void |
main(java.lang.String[] args)
This is the main method to do classification.
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static void |
printLicense()
Prints the license information to std err.
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public void doClassify(java.lang.String inputFile, java.lang.String outFile, java.lang.String propfile, ClassificationResultFormatter.FORMAT format, java.lang.String gene, int min_bootstrap_words) throws java.io.IOException, TrainingDataException
java.io.IOException
TrainingDataException
public static void printLicense()
public static void main(java.lang.String[] args) throws java.lang.Exception
Usage: java ClassifierCmd queryFile outputFile [property file].
queryFile can be one of the following formats: Fasta, Genbank and EMBL.
outputFile will be used to save the classification output.
property file contains the mapping of the training files.
Note: the training files and the property file should be in the same directory.
The default property file is set to data/classifier/16srrna/rRNAClassifier.properties.
java.lang.Exception