public class MCSample
extends java.lang.Object
Constructor and Description |
---|
MCSample(java.io.File f) |
MCSample(java.io.File sampleFile,
java.io.File dupCountFile) |
MCSample(java.io.File in,
java.lang.String sampleName) |
MCSample(java.util.List<ClassifierSequence> sampleSeqs,
java.lang.String sampleName) |
MCSample(java.util.List<ClassifierSequence> sampleSeqs,
java.lang.String sampleName,
java.io.File dupCountFile) |
MCSample(edu.msu.cme.rdp.readseq.readers.SeqReader reader,
java.lang.String name) |
MCSample(java.lang.String sampleName) |
MCSample(java.lang.String sampleName,
java.io.File dupCountFile) |
Modifier and Type | Method and Description |
---|---|
void |
addRankCount(ClassificationResult result) |
java.util.Map<java.lang.String,int[]> |
getBootstrapCountTable() |
static int |
getBootstrapIndex(double d) |
int |
getDupCount(java.lang.String seqName) |
ClassifierSequence |
getNextSeq() |
java.lang.String |
getSampleName() |
java.lang.String |
toString() |
public MCSample(edu.msu.cme.rdp.readseq.readers.SeqReader reader, java.lang.String name)
public MCSample(java.io.File f) throws java.io.IOException
java.io.IOException
public MCSample(java.lang.String sampleName)
public MCSample(java.lang.String sampleName, java.io.File dupCountFile) throws java.io.IOException
java.io.IOException
public MCSample(java.util.List<ClassifierSequence> sampleSeqs, java.lang.String sampleName)
public MCSample(java.util.List<ClassifierSequence> sampleSeqs, java.lang.String sampleName, java.io.File dupCountFile) throws java.io.IOException
java.io.IOException
public MCSample(java.io.File in, java.lang.String sampleName) throws java.io.IOException
java.io.IOException
public MCSample(java.io.File sampleFile, java.io.File dupCountFile) throws java.io.IOException
java.io.IOException
public java.lang.String getSampleName()
public ClassifierSequence getNextSeq() throws java.io.IOException
java.io.IOException
public int getDupCount(java.lang.String seqName)
public void addRankCount(ClassificationResult result)
public static int getBootstrapIndex(double d)
public java.util.Map<java.lang.String,int[]> getBootstrapCountTable()
public java.lang.String toString()
toString
in class java.lang.Object