public class ClassifierTreeBuilder<E extends edu.msu.cme.rdp.taxatree.Taxon>
extends java.lang.Object
Modifier and Type | Class and Description |
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static interface |
ClassifierTreeBuilder.ClassifierTaxonFactory<E extends edu.msu.cme.rdp.taxatree.Taxon> |
Constructor and Description |
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ClassifierTreeBuilder(edu.msu.cme.rdp.taxatree.ConcretRoot<E> root,
float conf,
ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory) |
ClassifierTreeBuilder(edu.msu.cme.rdp.taxatree.ConcretRoot<E> root,
java.util.List<ClassificationResult> classifications,
float conf,
ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory) |
ClassifierTreeBuilder(E rootTaxon,
float conf,
ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory) |
ClassifierTreeBuilder(E rootTaxon,
java.util.List<ClassificationResult> classifications,
float conf,
ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory) |
Modifier and Type | Method and Description |
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void |
appendClassification(ClassificationResult classification) |
void |
appendClassifications(java.util.List<ClassificationResult> classifications) |
edu.msu.cme.rdp.taxatree.ConcretRoot<E> |
getRoot() |
void |
setIncSeqNodes(boolean b) |
void |
setTaxonFactory(ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory) |
public ClassifierTreeBuilder(E rootTaxon, java.util.List<ClassificationResult> classifications, float conf, ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory)
public ClassifierTreeBuilder(edu.msu.cme.rdp.taxatree.ConcretRoot<E> root, java.util.List<ClassificationResult> classifications, float conf, ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory)
public ClassifierTreeBuilder(E rootTaxon, float conf, ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory)
public ClassifierTreeBuilder(edu.msu.cme.rdp.taxatree.ConcretRoot<E> root, float conf, ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory)
public void appendClassifications(java.util.List<ClassificationResult> classifications)
public void appendClassification(ClassificationResult classification)
public void setIncSeqNodes(boolean b)
public void setTaxonFactory(ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory)
public edu.msu.cme.rdp.taxatree.ConcretRoot<E> getRoot()